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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00382.1.g00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HSF | ||||||||
Protein Properties | Length: 262aa MW: 28741.5 Da PI: 5.0392 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 80.5 | 2.5e-25 | 11 | 69 | 2 | 60 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60 Fl+k+y ++ed+ ++++isw+++g++fvv+ ++efa+++Lpk+Fkhsnf+SFvRQLn+Y Zmw_sc00382.1.g00210.1.am.mk 11 FLTKTYAMVEDPGTDDTISWNDTGKAFVVWRPDEFARDLLPKHFKHSNFSSFVRQLNTY 69 9********************************************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.5E-28 | 5 | 105 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.2E-29 | 7 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 7.48E-24 | 9 | 69 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.6E-22 | 11 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-14 | 11 | 34 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-14 | 49 | 61 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.1E-14 | 62 | 74 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.170 | 1.8E-4 | 106 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MASPAAGTPP FLTKTYAMVE DPGTDDTISW NDTGKAFVVW RPDEFARDLL PKHFKHSNFS 60 SFVRQLNTYV SSHPFSSSYT QPFVRLDRDH ELGLCCVQGF KKVVADRWDG AVAELEEENA 120 RLRRENARLT RELARARRLC DGVRRLMSRY DHGGEGEDEA GSDGGRGGGA GPGGKPMLFG 180 VAIGSKRHRG NEEEEEEDDG AEDNGEEEDD DDERPVVRAR ESKKRNDQSD LDVLALSVRA 240 AAAARPGSGA AAGSRDRKSS VS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-17 | 1 | 69 | 11 | 78 | Heat shock factor protein 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015691545.1 | 9e-57 | PREDICTED: heat stress transcription factor B-2a-like | ||||
Swissprot | Q7XRX3 | 2e-44 | HFB2A_ORYSJ; Heat stress transcription factor B-2a | ||||
TrEMBL | B6SLK9 | 3e-68 | B6SLK9_MAIZE; Heat shock factor protein 4 | ||||
STRING | MLOC_65182.1 | 1e-67 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP121 | 37 | 394 |